Bioprocess data management

ABSTRACT

A data management system for a biological process, comprising:
         a. a single-use component,   b. a tag assembly, including a non-volatile memory storage component, that is associated with the single-use component,   c. the memory storage component including a unique identification and a memory, and at least one data element that describes a key performance, calibration or control parameter of the single-use component   d. a memory reader useable to obtain the identification from the memory storage component

RELATED APPLICATIONS

This application is a continuation of U.S. application Ser. No. 12/321,657 filed on Jan. 22, 2009, entitled BIOPROCESS DATA MANAGEMENT by Selker et al., which is a continuation-in-part of Ser. No. 12/150,806, filed May 1, 2008, entitled A SYSTEM AND METHOD FOR THE MANAGEMENT OF DATA APPLICABLE TO A BIOLOGICAL PROCESS by Selker et al, which application claims benefit under 35 U.S.C. §119(e) of U.S. Provisional Patent Application No. 60/928,179 filed May 8, 2007, entitled BIOPROCESS DATA MANAGEMENT by Selker et al., all of which applications are herein incorporated by reference in their entireties and for all purposes.

BACKGROUND OF THE INVENTION

Over the last several decades, biotechnology has become increasingly fundamental to our society and now has a major impact on the production of food, medicine, fuel, and materials. This importance and influence on our day to day lives has led to a desire to better monitor and control the processes used to implement this technology. In part due to these reasons, and to end a stagnant period in the technological advancement of drug development, the US FDA has created the PAT (Process Analytical Technology) initiative. This initiative encourages not only large pharmaceutical manufacturers but also smaller modem biotech companies to bring new technological advances into mainstream use to help modernize and optimize biotech manufacturing. Much of the impetus for the PAT initiative is to bring about advances in monitoring and control so that drug manufacturing is safer, more repeatable, more transparent, and less expensive and thereby protect the public. For example, in the “Process Control Tools” section of the PAT guidance document, it states that:

-   -   “Strategies should accommodate the attributes of the input         materials, the ability and reliability of the process analyzers         to measure critical analytes, and the achievement of process         endpoints to ensure consistent quality of the output materials         and final product.” Design optimization of drug formulation and         manufacturing and processes within the PAT framework can include         the following steps:     -   Identify and measure critical material and bio-process         attributes relating to product quality     -   Development of a process measurement system that allows         real-time or near real-time (e.g. on-line or at-line) monitoring         of critical bio-process/product attributes     -   Design process controls that enable adjustment to ensure that         critical process parameters are controlled     -   Develop mathematical relationships between product quality         attributes and measurements of critical material and process         attributes

Much of this can be summarized to mean that by using advanced monitoring of materials used and process variables (e.g.: pH, dissolved oxygen, dissolved CO₂, glucose, glutamine, lactate, ammonia) mathematical models of a bio- process can be created. Through the use of these models, the process yield can be predicted and thereby lead to optimized growth runs even if every process parameter is not fully understood. Once monitoring systems are in-place and models created, advanced control systems can be used to implement the optimization procedures.

In the future, for a typical microbial or cell growth run to conform to the PAT initiative as outlined above, it is likely that all the raw materials and also the data used in the growth process will need be recorded and tracked. For instance, the growth media manufacturer's formulation specifics, lot data and manufacture date will need to be logged so that issues like contamination, expiration, or other factors affecting quality or performance can be tracked. The same will be true for the actual cell line used, the pH buffer employed, the glucose feed, the sensor manufacturing data, and other inputs. As the trend towards disposable bioreactors, disposable sensors, and other disposable materials mature and become a major part of the manufacturing chain these items will need to be tracked as well.

BRIEF DESCRIPTION OF THE DRAWINGS

FIGS. 1 a and 1 b are flow charts showing two different process flows for using a radio frequency identification (RFID) tag as a tracking system for single-use bioprocess components: FIG. 1( a) prior art use flow, versus FIG. 1( b) use flow in accordance with the present invention. It should be noted that although the present system will be referred to as a “data management” system, its applicability encompasses process and process component monitoring (tracking and/or calibration) and also control of a bioprocess.

FIG. 2 is a schematic showing an example of a single-use bioreactor tracking system in accordance with the present invention.

FIG. 3 shows the block diagram of a typical gamma radiation resistant ferro-electric random access memory (FRAM) nonvolatile memory chip.

FIG. 4 is a schematic showing portions of a data management system in accordance with the present invention which can suitably utilize a FRAM chip.

FIGS. 5( a) and 5(b) show two examples of single-use bioreactor tracking systems and their integration into the overall data management and control system: FIG. 5( a) prior art data flow, versus FIG. 5( b) data flow in accordance with the present invention.

FIG. 6 shows a part of a bio-process control system in accordance with an alternative embodiment of the present invention where the RFID is directly attached to the disposable element (e.g., a dissolved oxygen probe) prior to packaging or sterilization, and the tagged disposable element is incorporated within a disposable assembly.

FIG. 7 shows a flow diagram in accordance with the present invention showing how to implement label security, to ensure that a single-use component is used only once.

FIG. 8 shows overall and also end and partial cut away side views of a disposable sensor assembly suitable for the practice of the present invention.

DESCRIPTION OF THE INVENTION

Our invention specifically addresses the need for automated data acquisition by a control system in bio-process manufacturing. For the tracking of any element (e.g., sensor, other component or bio-process ingredient) used in a bio-process, and in order to adhere to the concepts put forth in the PAT initiative, the bioprocess data management (control) system will need to record information that contains, but is not limited to:

-   -   1. Calibration and/or performance data     -   2. Serial and lot numbers     -   3. Material certifications     -   4. Aging information

This information can be automatically loaded into a control system or a transmitter that interfaces with the element to be interrogated using a variety of means as discussed in detail below. A transmitter here connotes a device that: i) connects to a probe or nonvolatile memory device and supplies it with power, ii) can access the probe or read stored information, and iii) has a human/machine interface (HMI) so that the data can be displayed and understood. After the data is retrieved, it can be utilized by the control system or by the transmitter to optimize the bio-process performance or the data can be displayed and/or logged as part of the data management system. For example, a sensor such as a dissolved oxygen or pH sensor can have its calibration data automatically retrieved in this way. The optimal control algorithm, including growth and feeding strategy, can be automatically implemented if the cell line and growth medium are known, provided only that this information is preprogrammed into the control system. Additionally, any regulatory agency information required can be recorded with the growth run data, provided the material certifications and lot numbers containing this information are automatically read into the system from the non-volatile memory device or other information storage device.

The information required to describe, control, and/or automate a modem biotech process will vary in both scope and quantity. Depending on the volume and sophistication of the data, it can be recorded and read back using a variety of methods. These methods include:

-   -   1. RFID chip     -   2. Nonvolatile memory/ EEPROM     -   3. Internet download     -   4. Other means to semi-automatically read labels or tags such as         holographic stored data markers or fluorescent nano-tags.

The data itself can be embedded in a label, tag, non-volatile memory (e.g.: FRAM), or RFID or surface acoustic wave (SAW) chip.

The prior art (e.g., US2005/0205658 or US2007/0200703), primarily describes a data tracking system, wherein a serial number is encoded in a RFID tag that is attached to equipment or components being monitored. The RFID tag is used to retrieve product information such as the lot number, date of manufacture, materials certificate numbers, and expiration date, from a database on a PC over an internet link The RFID tag can also have read-write capability, so that the tracking system can capture data relating to the exposure of the equipment or component to processes or environments that can damage it, such as sterilization by autoclaving or chemical cleaning The RFID tag is resistant to these cleaning processes and can be re-read many times during the course of the use of the component or equipment. The overall purpose of the prior art system is to track the aging of the equipment or component, so that its failure date can be predicted for scheduled maintenance, and it can automatically be re-ordered and restocked. The prior art describes collecting data from many samples into a database, in order to estimate the useful life and time to replacement for the component or equipment.

The prior art pertaining to RFID tags used on single-use bio-process equipment or components (e.g., US2008/0024310A1) that are sterilized by gamma irradiation, specifically states that the product tracking information such as serial and lot numbers should be stored on the gamma radiation resistant portion of the tag, but also that additional information, such as the radiation dose, is entered on the tag post irradiation. FIG. 1( a) illustrates the process flow for the RFID tags described in US2008/0024310A1. Therefore, the use case of the tag in the above-indicated Published Patent Application requires that at least a portion of the RFID tag memory must be gamma radiation resistant, a requirement that is satisfied by the FRAM technology utilized by companies such as Fujitsu and others. In contrast, the present invention describes labels, including but not limited to RFID tags, where the entirety of the information pertaining to the component is entered prior to the final sterilization step, rather than as a sequence during the manufacturing or assembly process for the component (e.g., filling a bag with media, or inserting a sensor into a bioreactor liner bag). The process flow for the present invention is shown in FIG. 1( b).

Unlike the present invention, the prior art does not describe or suggest a label or tag that carries process-specific or sensor calibration data, and also is usable to control a bioprocess and/or measure parameters of the bioprocess in real-time. The prior art also assumes that the data is both written to and entered from an external database rather than a transmitter and/or controller directly associated with both the bio-process and the component being used. Finally, the prior art assumes that the RFID tag is writeable (can be written to) and that the user will input more than one process event on the tag. In the present invention, the label (tag) is exclusively associated with a single-use component, and is therefore read only once, at the start of the bio-process, because it is discarded after the bio-process is complete. Other prior art pertaining to water quality monitoring tools (e.g., U.S. Pat. No. 7,007,541) is primarily aimed at re-usable sensors whose calibration constants change with aging or interchangeable sensors where the re-usable sensor heads are each unique enough that their parameters need to be accounted for systematically.

When using a semi-automatically-readable (take to reader) label (tag) such as a set of magnetic stripes (or equivalent marking system) or a memory device based on SAW (surface acoustic wave) chips, the reading of the data will advantageously be semiautomated. In the present context semi-automated means that the user will not need to manually enter the data describing the component, and will only need to bring a reader into sufficiently close proximity and with a specific orientation in order to accomplish the data transfer to the reader. An example in accordance with the present invention is shown in FIG. 2. In FIG. 2, 2.1 is a disposable element on which an encoded label 2.2 resides, 2.3 is a re-useable element, and 2.4 is the transmitter to which 2.3 is connected, 2.5 is an automation system that consists of both control software and hardware. A label reader 2.6 is shown connected to the automation system. Since the system is in communication with the transmitter 2.4, the label 2.2 information can be used by the transmitter. The disposable element 2.1 can, for example, be a disposable sensor, a disposable (single use) bioreactor vessel, a container of a particular microbe or cells from a cell bank, growth medium, pH buffer, or any other input or process variable used in a growth run or similar biotechnology process.

Another level of automation is the use of a non-volatile memory storage component such as FRAM (ferro-electric based random access memory chip) or an EEPROM (Electrically Erasable Programmable Read-Only Memory) chip (equivalent functionality to a label) to store data and provide an interlock for the system. A system using nonvolatile memory chips such as a FRAM or an EEPROM can be employed for any component that is plugged into (i.e., is physically connected to) the system. For instance, if using a disposable bioreactor vessel and/or a set of disposable sensors, the disposable elements can be plugged into the data management (control) system of the present invention. For example, if the bioreactor under study is a disposable bioreactor or bioreactor using disposable elements, the recorded information regarding the date of manufacture, the materials used and their certifications, (e.g.: growth media, sensor calibration data etc.) can all be automatically loaded into the control system memory from the nonvolatile memory after it is plugged into the system. A FRAM based nonvolatile memory is inexpensive and therefore can be readily disposed of with the disposable component after a single use.

The gamma radiation resistant, nonvolatile memory allows for the transfer of calibration or other information from the factory to the apparatus without concern for the possibility of operator error. This is a significant advance over the current state of the art which calls for an operator to enter this type of information via a keypad or by scrolling through alpha numeric characters one at a time. Any particular (or all) information can be encrypted in order to verify its authenticity and to protect it from alteration or tampering. This also allows the manufacturer to provide a unique identification code for each device/component for traceability purposes. This unique identification code thus allows the data management (control) system to control the number of times, duration, or conditions under which the component is used, and can therefore be used to prevent reuse, misuse and fraud. Such misuse can, for example, include trying to use pre-sterilized disposables more than once. FIG. 3 shows a block diagram of a FRAM-based, non-volatile memory chip. EEPROM's can also be obtained that are gamma radiation resistant, but to date these devices are more expensive and therefore somewhat less appealing in certain cases.

FIG. 4 depicts a typical application using a control system in accordance with the present invention. In FIG. 4, 4.1 is the disposable element, 4.2 is the FRAM or equivalent non-volatile storage element, 4.3 is a re-usable element or reader into which 4.1 is connected, 4.4 is a transmitter which can optionally interact with either the reusable element 4.3 or with the FRAM. When the disposable element 4.1 is connected to the reusable element 4.3, the data in the FRAM is read and processed as discussed above. The automation system, 4.5, is connected to the transmitter, and can act as the master controller or the repository for data read into the transmitter. Element 4.1 can be a disposable sensor, a disposable element for a bioreactor such as a valve or bag or a similar single-use item. As many of the disposable or single-use components in a bioprocess are relatively small, the size of the FRAM can be important. Many non-volatile memory storage components (chips) are physically large in order to help enhance their gamma radiation resistance which can pose a problem for locating the memory device on the disposable component. In general, chips that are similar in shape to a standard SOIC (small outline integrated circuit) package or a flat-pack with leads coming from all 4 sides of the chip will advantageously be utilized. The optimal chip will therefore preferably have a surface area no larger than about 1 cm² and be no thicker than about 1 mm and most preferably be approximately 6 mm×6 mm and 0.5 mm thick.

A similar result can be accomplished through the use of an RFID -based tagging system. Similar to the nonvolatile memory and the label systems described above, this embodiment of the present invention enables one to perform the following functions:

1. Transfer data and information from the manufacturer's calibration database or data storage to the control system without operator error.

2. Eliminate time consuming manual data entry via a keypad or by sequentially scrolling through alpha numeric characters one at a time.

3. Encrypt data and information to guarantee its authenticity.

4. Transfer information without out any physical contact or particular orientation of the RFID tag.

5. Provide a log of each unique identification tag for traceability, as well as to minimize possibility of misuse or fraud.

A benefit resulting from using an RFID tag system is that the identification system does not need to be physically attached to the disposable element. This method enables one to tag the disposable element or disposable sensor instrument (or the package that contains it), such that it can be tracked from manufacturing to final use. The RFID tag preferably includes a unique identification number. The tag also carries the aforementioned information in its nonvolatile memory. The information is advantageously encrypted and check-summed in order to prevent tampering and/or invalid calibration. In one example (FIG. 1( b), the RFID tag is attached to the disposable element and product specific information is entered on the tag prior to sterilization. The RFID tag is then sterilized together with the disposable element (component). For example, if this is a sensor, it will be the calibration data and other applicable manufacturing information; for a disposable bioreactor, it can be the films used; for growth medium, it can be the lot and serial number for process tracking This RFID tag system can be used with any disposable bioprocess components that will benefit from having information managed. The size of the RFID tag can be important as the efficacy is related to the size. The larger the RFID tag's area, typically the larger the antenna of the tag and hence the greater distance it can be from a reader and still be read. However, smaller tags with the antenna constructed of multiple loops are also effective and are therefore preferred. In general, the tag needs to be large enough to satisfy the distance requirements for its use, yet small enough that it can still be packaged with the single-use component which needs to be tracked, calibrated, or otherwise have its data managed. The RFID tag will therefore preferably have a substantially planar configuration and a surface area no greater than about 150 cm².

In the prior art techniques, the data flow to and from the label on the disposable element bypasses the automation system associated with the bioprocess in which the disposable element is used. FIG. 5 a illustrates the data flow as described in published applications US2005/0205658, US2007/0200703, and US2008/0024310A1. In these cases data from RFID tag 5.1 is read or written by reader 5.2 to computer 5.3 that links into an external database 5.4. Database 5.4 is either stored on computer 5.3 or is external, with Ethernet access from computer 5.3. Such data flow is appropriate for a system that is associated with manufacturing quality, materials requirements planning, or enterprise resource planning systems. Such a prior art system can generate a database that provides information to estimate useful service life and time to failure for components, as well as an ability to re-order inventory. However, such a database is only useful for the control of a bio-process system in the event of a process failure, when materials certificates and serial numbers must be accessed for a root cause analysis of the failure.

In the present invention, as in the embodiment shown in FIG. 5 b, the data flow from the disposable element label 5.5 occurs through reader 5.6 into either transmitter 5.7, whose output is connected to controller 5.8, or directly into controller 5.8. The process data containing the label information is then saved in 5.9 (the system historian or historical database) as part of the batch record, or as a process parameter. The data from label 5.5 is used either by transmitter 5.7 or controller 5.8 during the bio-process, in order to effect control of the bio-process. For example, calibration constants can be used by the transmitter to calculate sensor output values that are sent to the bio-process automation system, which then actuates pumps or mass flow control valves; or the amino acid concentration in the media of a pre-filled bioreactor bag is used by the control system to predict feeding and cell growth rates after inoculation. In both of these examples, the data from the label/non-volatile memory is actively used to control the bio-process, and generates additional, associated process data that can be used to characterize the effectiveness of the disposable element in the process for future runs. This use of disposable labels is equally applicable to upstream (cell culture/fermentation), downstream (purification), or fill-finish bio-processes.

Furthermore, the control system 5.8 can be linked to a materials requirements planning system within the fabrication facility 5.10, such as SAP or Oracle, update the inventory levels automatically after the completion of the process using the disposable element, and input process feedback into the plant management system. Unlike the prior art, which requires human intervention to an external database, this inventory management can be performed completely automatically using the data management system of the present invention.

In the present invention, the ID number that is stored on the label or other non-volatile memory may correspond to product specification information for the component, such as materials certifications, lot numbers, manufacturing date, and/or sterilization records. This information can be stored in a remote database, for example, a section of the supplier's database that is only accessible by the end user or OEM customer. In contrast to the prior art, where the informational database must be accessed manually by the user, in the present invention, the database URL address and an optional encrypted key-code for remote database access are also stored on the label or tag and are read out by the transmitter or automation system. If either transmitter or automation system is connected to the internet via the Ethernet, it can automatically access the URL, enter the optional key-code, and automatically gain access to the database information, in order to download it and store it in the process batch record. Alternatively, if the bio-process automation system and/or transmitter are programmed to have their own user ID and password to the database and the URL has been already entered into their memory, only the component's ID number required from each label or tag, and database access remains automatic.

Most systems in accordance with the present invention will utilize a disposable element such as a sensor element or a disposable element that comprises a sensor element, a reusable component that holds the electronics measuring the sensor response and which interfaces to the transmitter, and also an RFID tag having both a unique identifier and a nonvolatile memory element. A process for utilizing the system of the present invention would proceed according to the following steps:

-   -   1. The disposable (e.g.: sensor) element is first calibrated         using a known method.     -   2. After the calibration and performance data for the disposable         element is generated, it needs to be associated with the single         use component for which the data was generated in the         bio-process.     -   3. The disposable element is sealed in a bag with a visible         identifying number or tag, such as a paper label.     -   4. The bag containing the disposable element is gamma irradiated         and a RFID tag is applied to the outside of the bag.     -   5. A computer program encodes the calibration information on the         RFID tag, along with any additional information pertaining to         the disposable element, such as material certificate numbers,         batch numbers, etc.     -   6. This information is stored in the RFID tag's nonvolatile         memory elements.     -   7. The RFID tag's unique identifier is recorded visibly on its         exterior for ease of identification.

Once the disposable element is ready to be used, it is taken to the reusable element where a scanner (reader) reads the data from RFID tag, both the unique identifier and also the nonvolatile memory elements. The reusable element will have an associated transmitter or processor that decodes and applies the information it has read from the RFID tag. The disposable element can now be used with minimal intervention by the end user. If this is a sensor, it is now ready to take measurements; if it is disposable bioreactor system then all of the relevant data on the bag, the growth media, configuration, batch ID, etc., is now entered into the control system.

Note that in t embodiment illustrated in FIG. 6, 6.1 is the disposable element, 6.2 is the reusable element, and 6.3 are the RFID readers which can be located either in the transmitter 6.4 or the automation system 6.5. The RFID tag 6.6 is directly attached to the disposable element 6.1, and the calibration or other data is written onto the non-volatile memory of the RFID tag using a computer. The disposable element may then either be integrated into a larger assembly 6.7, such as a bioreactor bag for a disposable sensor or component and packaged in a bag 6.8, or be separately and directly packaged in a bag 6.8. The assembly 6.7, including any attached RFID tags, is then sterilized, either individually, or as a group on a pallet. When the assembly 6.7 is used in a bio-process, used each tag is removed from its associated component and scanned into the system.

The re-usable element, or the system to which the re-usable element is connected, will also preferably have its own nonvolatile storage. This memory can be used to log the usage of the disposable elements. For example, this usage log can be utilized to verify that the disposable element has never been used before. If the unique identification number has been used before or does not conform to a validation algorithm, the identification is invalidated and a warning to this effect is given through the interfaces. The architects of the system can decide how much or how little to minimize the user's activity. FIG. 7 shows an example of a flow diagram associated with RFID security, so that a single-use component cannot be re-used, and thereby not cross-contaminate a subsequent process.

Referring now to FIG. 8, there is illustrated overall (8.1) and also end and partial cut away side views of a disposable sensor assembly suitable for the practice of the present invention. 8.2 denotes electrodes which enable the non-volatile memory (such as a FRAM) 8.3 to interface with the transmitter such as that designated as 5.7 in FIG. 5. 

1. A data management system for a biological process, comprising: a. a single-use component or assembly, b. a RFID tag including a non-volatile memory storage component that is exclusively associated with the single-use component or assembly, c. the memory storage component including a unique identification, a memory, and at least one data element that describes a key performance, control, or calibration parameter of the single-use component relevant to said biological process, d. A memory reader useable to obtain the unique lot identification from the memory storage component and communicate at least one data element to allow measurement of the said parameter.
 2. The data management system of claim 1, wherein the single-use component is an assembly of a plurality of single-use components, each of said components having its own tag.
 3. The data management system of claim 1 wherein the memory reader is a transmitter.
 4. The data management system of claim 3 wherein the transmitter is used for the measurement of a bio-process relevant parameter
 5. The system of claim 4 wherein said bio-process parameter is pH, dissolved oxygen, dissolved CO₂, temperature, pressure, level, foam, cell density, cell viability, metabolites such as glucose, lactate, glutamine, glutamate or ammonia, anti-form, additives, amino acids, or a bio-process end product comprising a protein, antibody or plasmid.
 6. The data management system of claim 1 wherein the memory reader is a component of the process control system.
 7. The data management system of claim 1 wherein the memory storage component is a non-volatile memory that is not adversely affected by gamma radiation.
 8. The data management system of claim 7 wherein the memory storage component utilizes FRAM.
 9. The data management system of claim 1 wherein the memory storage component is a RFID tag comprising a material not adversely affected by gamma radiation.
 10. The RFID tag of claim 9 having a substantially planar configuration and a surface area no greater than about 150 cm²
 11. The data management system of claim 9 wherein the memory storage device utilizes FRAM.
 12. The data management system of claim 8 wherein the memory storage device is utilizes an EEPROM
 13. The data management system of claim 1, wherein the data element is at least one calibration constant for a sensor.
 14. The data management system of claim 1, wherein the data element is at least one critical additive for a bio-process media.
 15. The data management system of claim 1, wherein additional information is stored in the memory, including at least one of a manufacturing date, a batch number, a lot number, material specifications, material lot number, certifications for sterility, certificates of compliance, size specification, functional specifications, description of device, expiration date, process data, calibration data, lifetime data, composition data, or customer application data associated with the identification number.
 16. The data management system of claim 1 wherein the non-volatile memory storage component has a surface area no larger than about 1 cm² and is no thicker than about 1 mm.
 17. A method for data management and calibration in a biological process, comprising the steps of: i) attaching a gamma radiation proof RFID tag comprising a non-volatile memory storage component to a single use component applicable to said biological process, ii) entering the appropriate data concerning the component on the tag, iii) gamma radiation sterilizing the single use component and tag, and iv) reading the data from the tag and inputting said data into the calibration system for said biological process.
 18. A method in accordance with claim 17 wherein at least a portion of said data contains an encrypted URL. 